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病毒基因组
基因组编号 毒株名称 引用编号 病毒类型 物种名称 采样国家 采样时间 宿主 序列长度 发布时间 分离来源 物种ID 种名 属名 科名 数据源 采样单位 采样地址 提交者 提交者单位 覆盖度 有效碱基数量 有效碱基百分比
OEAV1470944 hCoV-19/mink/Slovenia/D1/2020 EPI_ISL_1490186 RNA virus Severe acute respiratory syndrome coronavirus 2 Slovenia 2020-11-23 Mustela putorius furo 29806 2021-04-06 Oropharyngeal swab 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID University of Ljubljana, Faculty of Veterinary Medicine Gerbičeva ulica 60, SI-1000 Ljubljana Samo Zakotnik, Tomaž Mark Zorec, Matic Brvar, Miša Korva, Mario Poljak, Tatjana Avšič – Županc, Jožko Račnik, Brigita Slavec, Olga Zorman Rojs, Milan Matko, Ana Kočevar Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana 29578 99.24
OEAV1694384 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Ferret/ESP/USA/2020 MZ099821 RNA viruses Severe acute respiratory syndrome coronavirus 2 Spain 2020-11-16 Mustela putorius furo 29824 2021-05-05 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Barroso-Arevalo,S., Gortazar,C., Ferreras-Colino,E., Isla,J., de la Fuente,G., Rivera,B., Dominguez,L., de la Fuente,J. and Sanchez-Vizcaino,J.M. Animal Health, Complutense University of Madrid 29824 100.00
OEAV1694385 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Ferret/ESP/USA/2020 MZ082987 RNA viruses Severe acute respiratory syndrome coronavirus 2 Spain 2020-08-26 Mustela putorius furo 29824 2021-05-04 feces 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Barroso-Arevalo,S., Gortazar,C., Ferreras-Colino,E., Isla,J., de la Fuente,G., Rivera,B., Dominguez,L., de la Fuente,J. and Sanchez-Vizcaino,J.M. Animal Health, Complutense University of Madrid 29824 100.00
OEAV2968245 hCoV-19/mink/Belarus/RRPCEM-VIS_2216O/2020 EPI_ISL_2521999 RNA virus Severe acute respiratory syndrome coronavirus 2 Belarus 2020-06-22 Mustela putorius furo 29767 2021-06-14 Organ 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae GISAID The Laboratory of Biosafety with Pathogens Collection The Republican Research and Practical Center for Epidemiology and Microbiology (RRPCEM) Republic of Belarus, 220114, Minsk, 23 Filimonova str. Ilarion Kupryianav, Iryna Subotsina, Anatoli Krasko, Olga Klimovich, Elena Gasich, Kirill Bulda, Artur Akhremchuk, Leonid Valentovich, Sergei Semenov, Olga Saleuskaya, Larysa Radzienava Laboratory for HIV and opportunistic infections diagnosis The Republican Research and Practical Center for Epidemiology and Microbiology (RRPCEM) 90х 29767 100.00
OEAV3245557 SARS-CoV-2/ferret/USA/G242/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ433211 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29540 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29540 100.00
OEAV3245559 SARS-CoV-2/ferret/USA/G244/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ433213 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29540 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29540 100.00
OEAV3245561 SARS-CoV-2/ferret/USA/G442/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), and ORF7b (ORF7b) genes, complete cds; ORF8 gene, complete sequence; and nucleocapsid phosphoprotein (N) and ORF10 protein (ORF10) genes MZ433215 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29544 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29540 99.99
OEAV3245564 SARS-CoV-2/ferret/USA/G451/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ433218 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29531 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29269 99.11
OEAV3245565 SARS-CoV-2/ferret/USA/G452/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ433219 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29531 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29171 98.78
OEAV3245568 SARS-CoV-2/ferret/USA/G4C41/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ433222 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29531 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29531 100.00
OEAV3245569 SARS-CoV-2/ferret/USA/G4C42/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ433223 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29531 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29531 100.00
OEAV3245570 SARS-CoV-2/ferret/USA/G4C43/2021 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MZ433224 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2021-06-02 Mustela putorius furo 29531 2021-06-22 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Greninger,A.L., Lin,M.J., Cox,R.M. and Plemper,R.K. Virology, University of Washington 29531 100.00
OEAV533697 SARS-CoV-2/Mink/USA/MI-CDC-IHWB-7153/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), surface glycoprotein (S), ORF3a protein (ORF3a), envelope protein (E), membrane glycoprotein (M), ORF6 protein (ORF6), ORF7a protein (ORF7a), ORF7b (ORF7b), ORF8 protein (ORF8), nucleocapsid phosphoprotein (N), and ORF10 protein (ORF10) genes MW562253 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-15 Mustela lutreola 29912 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29358 98.15
OEAV533821 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHQ7-6918/2020 MW562266 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-13 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29898 99.99
OEAV533828 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHSI-7015/2020 MW562271 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533829 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHSO-7022/2020 MW562272 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29899 100.00
OEAV533830 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHTR-7067/2020 MW562273 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533841 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHUK-7101/2020 MW562282 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-14 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533843 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHUR-7108/2020 MW562284 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-15 Mustela lutreola 29900 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29900 100.00
OEAV533851 Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Mink/USA/MI-CDC-IHWC-7160/2020 MW562291 RNA viruses Severe acute respiratory syndrome coronavirus 2 United States 2020-10-15 Mustela lutreola 29910 2021-02-03 oronasopharynx 2697049 Severe acute respiratory syndrome-related coronavirus Betacoronavirus Coronaviridae NCBI Virus/Genbank Li,Y., Zhang,J., Tao,Y., Montmayeur,A., Lynch,B., Queen,K., Uehara,A., Marine,R., Cook,P., Paden,C.R., Wang,H. and Tong,S. Respiratory Viruses Branch, Centers for Disease Control and Prevention 29910 100.00
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